date: 2024-09-25
title: Pairwise-sequence-alignment
status: DONE
author:
- AllenYGY
tags:
- Lab
- Bioinfo
publish: True
Pairwise-sequence-alignment
########################################
# Program: needle
# Rundate: Wed 25 Sep 2024 07:11:13
# Commandline: needle
# -auto
# -stdout
# -asequence emboss_needle-I20240925-071108-0349-62579891-p1m.asequence
# -bsequence emboss_needle-I20240925-071108-0349-62579891-p1m.bsequence
# -datafile EBLOSUM62
# -gapopen 10.0
# -gapextend 0.5
# -endopen 10.0
# -endextend 0.5
# -aformat3 pair
# -sprotein1
# -sprotein2
# Align_format: pair
# Report_file: stdout
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: EMBOSS_001
# 2: EMBOSS_001
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 199
# Identity: 176/199 (88.4%)
# Similarity: 186/199 (93.5%)
# Gaps: 0/199 ( 0.0%)
# Score: 962.0
#
#
#=======================================
EMBOSS_001 1 MEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQ 50
|||||||||||||||.:|||||||||..||||||||||||||||.|||||
EMBOSS_001 1 MEASPASGPRHLMDPCVFTSNFNNGIRWHKTYLCYEVERLDNGTWVKMDQ 50
EMBOSS_001 51 HRGFLHNQAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSP 100
|||||||||:|.|.|..|||||||||.|:|..||||||||||||||||||
EMBOSS_001 51 HRGFLHNQARNPLYGLDGRHAELRFLGLLPYWQLDPAQIYRVTWFISWSP 100
EMBOSS_001 101 CFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQV 150
|||||||.:|||||||||||||||||||||||||||||||||||||||||
EMBOSS_001 101 CFSWGCARQVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQV 150
EMBOSS_001 151 SIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQNQGN 199
||||||||::||:||||||||||||||||:||||||||:|:|||.||||
EMBOSS_001 151 SIMTYDEFEYCWNTFVDHQGCPFQPWDGLEEHSQALSGKLQAILLNQGN 199
#---------------------------------------
#---------------------------------------