Pairwise-sequence-alignment

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# Program: needle
# Rundate: Wed 25 Sep 2024 07:11:13
# Commandline: needle
#    -auto
#    -stdout
#    -asequence emboss_needle-I20240925-071108-0349-62579891-p1m.asequence
#    -bsequence emboss_needle-I20240925-071108-0349-62579891-p1m.bsequence
#    -datafile EBLOSUM62
#    -gapopen 10.0
#    -gapextend 0.5
#    -endopen 10.0
#    -endextend 0.5
#    -aformat3 pair
#    -sprotein1
#    -sprotein2
# Align_format: pair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: EMBOSS_001
# 2: EMBOSS_001
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 199
# Identity:     176/199 (88.4%)
# Similarity:   186/199 (93.5%)
# Gaps:           0/199 ( 0.0%)
# Score: 962.0
# 
#
#=======================================

EMBOSS_001         1 MEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQ     50
                     |||||||||||||||.:|||||||||..||||||||||||||||.|||||
EMBOSS_001         1 MEASPASGPRHLMDPCVFTSNFNNGIRWHKTYLCYEVERLDNGTWVKMDQ     50

EMBOSS_001        51 HRGFLHNQAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSP    100
                     |||||||||:|.|.|..|||||||||.|:|..||||||||||||||||||
EMBOSS_001        51 HRGFLHNQARNPLYGLDGRHAELRFLGLLPYWQLDPAQIYRVTWFISWSP    100

EMBOSS_001       101 CFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQV    150
                     |||||||.:|||||||||||||||||||||||||||||||||||||||||
EMBOSS_001       101 CFSWGCARQVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQV    150

EMBOSS_001       151 SIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQNQGN    199
                     ||||||||::||:||||||||||||||||:||||||||:|:|||.||||
EMBOSS_001       151 SIMTYDEFEYCWNTFVDHQGCPFQPWDGLEEHSQALSGKLQAILLNQGN    199


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